Viral Metagenome Project

A) Original articles in peer reviewed journals

  1. Lewandowska DW, Zagordi O, Zbinden A, Schuurmans MM, Schreiber P, Geissberger FD, Huder JB, Böni J, Benden C, Mueller NJ*, Trkola A* and Huber M* Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains. Diagn. Microbiol. Infect. Dis. 2015;83:133-138 (IF 3.5)
  2. Huber M*, Metzner KJ*, Geissberger FD, Shah C, Leemann C, Klimkait T, Böni J, Trkola A and Zagordi O MinVar: A rapid and versatile tool for HIV-1 Drug Resistance Genotyping by Deep Sequencing. J Virol Methods. 2016;240:7-13 (IF 1.5)
  3. Lewandowska DW, Schreiber PW, Schuurmans MM, Ruehe B, Zagordi O, Bayard C, Greiner M, Geissberger FD, Capaul R, Zbinden A, Böni J, Benden C, Mueller NJ*, Trkola A* and Huber M* Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection. PLoS ONE. 2017;12:e0177340 (IF 3.1)
  4. Lewandowska DW, Zagordi O, Geissberger FD, Kufner V, Schmutz S, Böni J, Metzner KJ, Trkola A and Huber M  Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. BMC Microbiome. 2017;5:115-128 (IF 9.0)
  5. Schreiber PW*, Kufner V*, Hübel K, Schmutz S, Zagordi O, Kaur A, Bayard C, Greiner M, Zbinden A, Capaul R, Böni J, Hirsch HH, Mueller TF, Mueller NJ*, Trkola A*, Huber M*, Metagenomic virome sequencing in living donor-recipient kidney transplant pairs revealed JC Polyomavirus transmission. Clinical Infectious Diseases. 2018; accepted (IF 9.1)

B) Case reports

  1. Lewandowska DW, Capaul R, Prader S, Zagordi O, Geissberger FD, Kügler M, Knorr M, Berger C, Güngör T, Reichenbach J, Shah C, Böni J, Zbinden A, Trkola A, Pachlopnik Schmid J*, Huber M* Persistent mammalian orthoreovirus, coxsackievirus and adenovirus co-infection in a child with a primary immunodeficiency detected by metagenomic sequencing: a case report. BMC Infectious Diseases. 2018;18:33 (IF 2.7)